YonedaAI Research Collective

Category-theoretic foundations for physics, mathematics, and AI — a modular body of research spanning quantum foundations, foundations of mathematics, and the mathematics of intelligence

122 Papers
27 Collections
23 Research Sites
50 Repositories

Research Programs

27 collections across four fields. Each program links into the full paper library below; many have dedicated sites and repositories.

The Yoneda Constraint

Four interconnected concepts form the mathematical backbone of Quantum Perspectivism — and the derivation chain runs from the Yoneda Lemma to quantum mechanics.

Measurement Categories

Observer-system interactions formalized as morphisms in a structured category. The measurement category encodes what an observer can access about a system.

Yoneda Embedding

Accessible knowledge via representable presheaves. The Yoneda embedding maps each system to its complete relational profile, faithfully and fully.

Kan Extension Deficits

Information loss at epistemic horizons quantified as the failure of Kan extensions to be exact. The deficit measures inaccessible structure.

Cohomological Obstructions

No-go theorems as presheaf failures. Bell's theorem, Kochen-Specker, and contextuality arise as non-vanishing cohomology classes.

From Yoneda to Quantum Mechanics

The complete 11-step derivation chain showing how quantum mechanics emerges as a mathematical consequence of the Yoneda Lemma.

Step Structural Input Physical Output Code
01 Yoneda Lemma Physical identity is relational
02 Presheaf condition States are context-dependent data
03 Monoidal contexts Linear (vector space) structure
04 Perspectival consistency Inner product / Hilbert space
05 Naturality of observables Self-adjoint operators
06 Yoneda isomorphism + Gleason Born rule
07 Product categories Entanglement
08 Non-commutative contexts Complementarity / uncertainty
09 Presheaf restriction Measurement (no collapse)
10 Topos structure Quantum logic
11 Natural automorphisms Unitary evolution / Schrödinger eq.

Paper Library

122 papers across 27 collections — quantum foundations, category theory, quantum error correction, foundations of mathematics, and the mathematics of AI. Every paper is available as a PDF.

Mathematical Representations of Quantum Gravity

13 papers · Physics & Quantum Website ↗GitHub ↗

Research Network

23 companion sites — each research program in physics, mathematics, and AI is published as its own dedicated site.

Physics

Principia Physica

A modular physics framework: separate laws composing hierarchically into emergent structure.

principia-physica-pilot.vercel.app ↗
Physics

Condensed Representation Theory of Physics

Seven-part program recasting physics on condensed mathematics.

condensed-representation-theory-of.vercel.app ↗
Physics

Quantum Gravity Representation Library

Thirteen mathematical representations of quantum gravity, from spin foams to celestial CFT.

math-qg-representation-library.vercel.app ↗
Physics

Condensed Phase Spectrum

Topological phases of matter through condensed families of observables.

condensed-phase-spectrum.vercel.app ↗
Physics

Emergent Spacetime Dynamics

Spacetime as an emergent structure rather than a fundamental background.

emergent-spacetime-dynamics.vercel.app ↗
Physics

Gravity & Information Geometry

Gravitation reformulated through the geometry of information.

gravity-information-geometry.vercel.app ↗
Physics

The Yoneda Constraint

A universal axiom for embedded observers, from Gödel to quantum measurement.

yoneda-constraint.vercel.app ↗
Physics

Minimal Runtime Axiom

Runtime as proof of ignorance: a type-theoretic account of physical law.

minimal-runtime-axiom.vercel.app ↗
Physics

Foundational Reformulation

Reformulating fundamental physics with foundational mathematics as the baseline.

foundational-reformulation.vercel.app ↗
Mathematics

Mathematics as Physical Representation

Motives, polylogarithms, and regulators as the pre-numerical substrate of physical quantity.

mathematics-physical-representation.vercel.app ↗
Mathematics

Math–Physics Library

A library of mathematical structures for physical theory.

math-phy-library.vercel.app ↗
Mathematics

HoTT Foundations of Mathematics

The foundations of mathematics rebuilt in homotopy type theory.

hott-foundations-mathematics.vercel.app ↗
Mathematics

Formalized Foundations of Mathematics

Machine-checked formalization of foundational mathematics.

formalized-foundations-mathematics.vercel.app ↗
Mathematics

HoTT Riemann Hypothesis Program

A multi-volume program approaching the Riemann Hypothesis through homotopy type theory.

hott-riemann-hypothesis.vercel.app ↗
AI

GrokRxiv

An AI peer-review archive for research preprints.

grokrxiv.org ↗
AI

CatDB

A category-theoretic approach to databases, with a companion research site.

catdb.ai ↗
AI

ContextFS

Persistent, typed memory for AI coding agents across sessions.

contextfs.ai ↗
AI

HoTT Hallucination Research

A homotopy-theoretic classification of language-model hallucination.

hott-hallucination-research.vercel.app ↗
AI

Ferrous Bridge

Agent-orchestrated, verification-backed C → Rust migration.

ferrous-bridge.vercel.app ↗
AI

The Joule Standard

Energy-denominated economics for machine intelligence.

joule-standard.vercel.app ↗
AI

Agentic Economics

Economic dynamics of autonomous AI agents.

agentic-economics-five.vercel.app ↗
AI

JAPL

An independent programming-language project.

japl-lang.org ↗
AI

DNA-Lang

A language experiment inspired by genetic encoding.

dna-lang-delta.vercel.app ↗

Repositories

50 public research repositories on github.com/MagnetonIO — LaTeX sources, Haskell verifications, and research tooling.

Physics & Quantum

29 repositories

black_hole_info_paradox_resolution

Haskell

A formal resolution to the Black Hole Information Paradox through information-theoretic foundations

categorical-architecture-qp

TeX

The Categorical Architecture of Quantum Perspectivism: Topoi, Logic, and Dynamics [math-ph] — 27pp peer-reviewed paper with Haskell forma…

connections-existing-frameworks

TeX

Quantum Perspectivism and Its Relations: RQM, QBism, Many-Worlds, and Topos Theory [quant-ph] — 32pp peer-reviewed paper with Haskell for…

crisis-of-foundations

TeX

The Crisis of Quantum Foundations: Why Physics Needs the Yoneda Constraint [quant-ph] — 27pp peer-reviewed paper with Haskell formalization

derived-functors-qec

TeX

Derived Functors and Quantum Error Correction: A Homotopy-Theoretic Approach

emergent-spacetime-dynamics

HTML

A modular four-part research series formalizing emergent phases of matter from information through category theory. Site: https://emergen…

emergent_spacetime

TeX

Investigating emergent spacetime through simulations and theoretical models to understand its origins.

entanglement-complementarity-measurement

TeX

Entanglement, Complementarity, and Measurement as Categorical Phenomena [quant-ph] — 27pp peer-reviewed paper with Haskell formalization

first-law-entanglement

Haskell

Rigorous Haskell proof of the First Law of Entanglement (δS_A = δ⟨K_A⟩) - the quantum information principle showing how spacetime emerges…

functorial-fission

Haskell

A Functorial Formulation of Nuclear Fission: Category theory meets nuclear physics with type-safe Haskell implementation

functorial-physics

TeX

Explore theoretical physics through functorial frameworks, unifying mathematical structures and physical phenomena.

FunctorialHamiltonians

Python

A repository exploring Hamiltonian mechanics using category theory and functors. It demonstrates the construction and transformation of H…

mathematical_physics

TeX

An interdisciplinary collection of resources on the nexus of advanced mathematics and theoretical physics, with an emphasis on fundamenta…

modular-physics

TeX

A compositional framework for fundamental physics laws based on information-theoretic principles

on_the_same_origin_of_quantum_physics_and_general_relativity_expanded_with_code

TeX

Code For Unified Physics

open-problems-qp

TeX

Open Problems in Quantum Perspectivism: From Category Structure to Experimental Signatures [quant-ph] — 32pp peer-reviewed paper with Has…

philosophical-implications-qp

TeX

Philosophical Implications of Quantum Perspectivism: Structural Realism and the Primacy of Relation [physics.hist-ph] — 26pp peer-reviewe…

principia-physica-pilot

TeX

Bounded three-paper Principia Physica pilot with a synthesis paper and representative Lean and Haskell artifacts.

proof_as_code_qec

TeX

Compositional quantum error correction pipeline in Haskell, integrating topological, penalty-based, and type-theoretic QEC with code-base…

quantum-gravity-emergent-spacetime

TeX

Quantum Gravity and Emergent Spacetime from Perspectival Structure [hep-th] — 29pp peer-reviewed paper with Haskell formalization

quantum-perspectivism-haskell

Haskell

Complete Haskell implementation of Quantum Perspectivism — categorical framework for foundational physics via the Yoneda Constraint. 42 m…

quantum-topological-qec

TeX

Quantum topological QEC: Explore algorithms for error correction in quantum systems using topological properties. #QEC #topological- codes

quantum_unification

TeX

Investigations into unifying quantum mechanics with broader physical theories, exploring foundational concepts and beyond.

QuantumFlow

TeX

QuantumFlow – A Python library for simulating derived Hamiltonians in quantum fields, lattice QCD, quantum circuits, and biophysics. Supp…

technical-constructions-qp

TeX

Technical Constructions in Quantum Perspectivism: Complex Amplitudes, Gleason, and Decoherence [math-ph] — 26pp peer-reviewed paper with …

type-safe-physics

TeX

Type-Safe Physics: A framework for expressing physics with mathematical rigor using type theory, category theory, and formal verification…

yoneda-ai

TeX

Category-theoretic foundations for open problems in quantum mechanics, gravity, and observer theory — 6 papers applying the Yoneda Constr…

yoneda-constraint-quantum-structure

TeX

Deriving Quantum Mechanics from the Yoneda Constraint [quant-ph] — 36pp peer-reviewed paper with Haskell formalization

yoneda-physical-content

TeX

The Yoneda Lemma as Physical Law: Identity, Relation, and the Structure of Reality [math.CT] — 29pp peer-reviewed paper with Haskell form…

AI & Computation

15 repositories

ai-memory-merge-protocol

TeX

An Integrated Memory and Knowledge-Graph Architecture Leveraging mem0, Fibered-Sheaf Merging, and AI Preprint Forge

ai-preprint-forge

Python

AI-powered framework for automated research paper generation and publication. Combines LaTeX creation, PDF conversion, Git management, an…

ai_theory

TeX

Advancing the theoretical foundations of Artificial Intelligence through interdisciplinary research. This repository bridges AI, mathemat…

CatDB-Research

TeX

CatDB is a Rust-based semantic multimodel data platform for typed schemas, composable mappings, versioned migrations, federated queries, …

chain-of-intent

Python

Chain of Intent (CoI): Novel AI alignment framework treating intent as mathematically transformable objects. Implements semantic preserva…

contextfs-node

TypeScript

Git for your AI conversations - Local-first AI memory layer with MCP server support

database_theory

TeX

Advancing database theory through interdisciplinary research. Explore mathematical frameworks like Topos Theory, functional programming, …

local_rag_pipeline

Python

A data processing pipeline for analyzing content from local data, including scraping, metadata extraction, and text analysis.

market-theory

TeX

Predictive Market Theory: Markets as Distributed Bayesian Inference Engines — Bayesian belief functions, thermodynamic structure, HFT bel…

preprint-forge-frontend

TypeScript

Frontend to AI-powered framework for automated research paper generation and publication.

quantum_database_theory

TeX

Cutting-edge exploration of quantum-enhanced database operations using principles of quantum computing. Join us! #quantum #database #tech…

time-compression-paradox

TeX

The Time Compression Paradox: A formal analysis of why AI increases rather than eliminates work. Four-paper research series (~91 pages) b…

typesafe-context

Python

Type-safe context engineering for AI-native workflows. Pydantic + Instructor + ContextFS integration.

voltforge

TeX

VoltForge: Software-defined power interoperability for cordless tool ecosystems. 5 research papers + Rust #![no_std] firmware for typed, …

yonedaai-industry-research

TeX

YonedaAI Methodology: Mitigating AI Code Generation Limitations through Risk-Aware Engineering, Golden Paths, and Enterprise AI Governanc…

About YonedaAI

YonedaAI Research Collective is a frontier research organization applying category theory and advanced AI to the foundational problems of physics.

Mission: To derive the mathematical structures of physics from first principles using the Yoneda Lemma as a foundational constraint, and to publish rigorous, peer-reviewed research with complete executable codebases.

Research Program: 122 papers across 27 collections spanning quantum foundations, quantum gravity, foundations of mathematics, and the mathematics of AI. The 16-paper Quantum Perspectivism core includes complete Haskell implementations that verify the mathematical constructions.

Methodology: Agent Orchestration for Frontier Science

YonedaAI developed a multi-agent parallel execution architecture that transforms research questions into peer-reviewed papers with verified code. This is what makes YonedaAI unique: cutting-edge AI agent orchestration applied to real science, producing rigorous mathematical research at unprecedented speed and scale.